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Genetic Features of Aflatoxin-Associated Hepatocellular Carcinoma

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机构: [1]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol, Beijing, Peoples R China; [2]Peking Union Med Coll, Beijing, Peoples R China; [3]Collaborat Innovat Ctr Canc Med, Beijing, Peoples R China; [4]Peking Univ, Hosp 3, Beijing, Peoples R China; [5]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, Dept Abdominal Surg Oncol, Beijing, Peoples R China; [6]Qidong Peoples Hosp, Qidong, Jiangsu, Peoples R China; [7]Qidong Liver Canc Inst, Qidong, Jiangsu, Peoples R China; [8]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, Dept Pathol, Beijing, Peoples R China; [9]Chinese Acad Med Sci, Peking Union Med Coll, Inst Basic Med Sci, State Key Lab Med Mol Biol, Beijing, Peoples R China; [10]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, Beijing, Peoples R China; [11]Sun Yat Sen Univ, Ctr Canc, State Key Lab Oncol Southern China, Collaborat Innovat Ctr Canc Med,Dept Expt Res, Guangzhou, Guangdong, Peoples R China; [12]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol,Immunol Dept, Beijing, Peoples R China; [13]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol,Lab Cell & Mol Biol, Beijing, Peoples R China; [14]Chinese Acad Med Sci, Canc Hosp, 17 Panjiayuan Nanli, Beijing 100021, Peoples R China
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关键词: Liver Cancer Aspergillus Risk Factor Pathogenesis

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BACKGROUND & AIMS: Dietary exposure to aflatoxin is an important risk factor for hepatocellular carcinoma (HCC). However, little is known about the genomic features and mutations of aflatoxin-associated HCCs compared with HCCs not associated with aflatoxin exposure. We investigated the genetic features of aflatoxin-associated HCC that can be used to differentiate them from HCCs not associated with this carcinogen. METHODS: We obtained HCC tumor tissues and matched non-tumor liver tissues from 49 patients, collected from 1990 through 2016, at the Qidong Liver Cancer Hospital Institute in China-a high-risk region for aflatoxin exposure (38.2% of food samples test positive for aflatoxin contamination). Somatic variants were identified using GATK Best Practices Pipeline. We validated part of the mutations from whole-genome sequencing and whole-exome sequencing by Sanger sequencing. We also analyzed genomes of 1072 HCCs, obtained from 5 datasets from China, the United States, France, and Japan. Mutations in 49 aflatoxin-associated HCCs and 1072 HCCs from other regions were analyzed using the Wellcome Trust Sanger Institute mutational signatures framework with non-negative matrix factorization. The mutation landscape and mutational signatures from the aflatoxin-associated HCC and HCC samples from general population were compared. We identified genetic features of aflatoxin-associated HCC, and used these to identify aflatoxin-associated HCCs in datasets from other regions. Tumor samples were analyzed by immunohistochemistry to determine microvessel density and levels of CD34 and CD274 (PD-L1). RESULTS: Aflatoxin-associated HCCs frequently contained C>A transversions, the sequence motif GCN, and strand bias. In addition to previously reported mutations in TP53, we found frequent mutations in the adhesion G protein-coupled receptor B1 gene (ADGRB1), which were associated with increased capillary density of tumor tissue. Aflatoxin-associated HCC tissues contained high-level potential mutation-associated neoantigens, and many infiltrating lymphocytes and tumors cells that expressed PD-L1, compared to HCCs not associated with aflatoxin. Of the HCCs from China, 9.8% contained the aflatoxin-associated genetic features, whereas 0.4%-3.5% of HCCs from other regions contained these genetic features. CONCLUSIONS: We identified specific genetic and mutation features of HCCs associated with aflatoxin exposure, including mutations in ADGRB1, compared to HCCs from general populations. We associated these mutations with increased vascularization and expression of PD-L1 in HCC tissues. These findings might be used to identify patients with HCC due to aflatoxin exposure, and select therapies.

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出版当年[2017]版:
大类 | 1 区 医学
小类 | 1 区 胃肠肝病学
最新[2023]版:
大类 | 1 区 医学
小类 | 1 区 胃肠肝病学
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第一作者机构: [1]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol, Beijing, Peoples R China; [2]Peking Union Med Coll, Beijing, Peoples R China; [3]Collaborat Innovat Ctr Canc Med, Beijing, Peoples R China; [4]Peking Univ, Hosp 3, Beijing, Peoples R China;
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通讯机构: [2]Peking Union Med Coll, Beijing, Peoples R China; [3]Collaborat Innovat Ctr Canc Med, Beijing, Peoples R China; [10]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, Beijing, Peoples R China; [11]Sun Yat Sen Univ, Ctr Canc, State Key Lab Oncol Southern China, Collaborat Innovat Ctr Canc Med,Dept Expt Res, Guangzhou, Guangdong, Peoples R China; [12]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol,Immunol Dept, Beijing, Peoples R China; [13]Chinese Acad Med Sci, Canc Hosp, Natl Canc Ctr, State Key Lab Mol Oncol,Lab Cell & Mol Biol, Beijing, Peoples R China; [14]Chinese Acad Med Sci, Canc Hosp, 17 Panjiayuan Nanli, Beijing 100021, Peoples R China
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