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Isothermal amplification based on specific signal extraction and output for fluorescence and colorimetric detection of nucleic acids

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机构： [1]Department of Clinical Laboratory, Sichuan Cancer Hospital and Institute, Sichuan Cancer Center, School of Medicine, University of Electronic Science and Technology of China, Chengdu, 610041, PR China [2]School of Pharmacy & School of Preclinical Medicine, North Sichuan Medical College, Nanchong, 637000, PR China [3]Department of Clinical Laboratory, Affiliated Hospital of North Sichuan Medical College & Translational Medicine Research Center, North Sichuan Medical College, Nanchong, 637000, PR China [4]Department of Laboratory Medicine, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610072, PR China

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关键词： Specific signal extraction Isothermal amplification Nucleic acids detection Fluorescence and colorimetric detection

摘要：

Due to the complexity of compositions and low abundance of target in clinical sample, nucleic acids detection often suffers from false positives caused by nonspecific amplification. In in vitro diagnosis (IVD), PCR usually employ TaqMan probe to report specific signals and block false positive signals. However, nucleic acid isothermal amplifications, such as loop-mediated isothermal amplification (LAMP), lack of mature specific signal output mechanism, which prevents them from being used for IVD and point-of-care testing (POCT). In this work, we constructed a specific signal extract-to-output isothermal detection system (SSEI). SSEI contains a well-designed DNA probe for specific signal extraction and output in LAMP. This probe is a double-stranded DNA with an overhang sequence and named as extract-to-output probe (ETO probe). ETO probe can recognize the target-specific intermediate products in LAMP and release another signal-output probe (OP) to report the target-specific signals. With these unique properties, SSEI can detect as low as 10 copies of target DNA per reaction either by fluorescence detector or naked eyes. Moreover, due to the excellent performance against background nucleic acids interference, this biosensing platform had been successfully used for hepatitis B virus (HBV) clinical samples detection.Copyright © 2022 Elsevier B.V. All rights reserved.

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出版当年[2023]版：

大类 | 1 区

化学

小类 | 1 区分析化学

最新[2023]版：

大类 | 1 区

化学

小类 | 1 区分析化学

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出版当年[2023]版：

Q1 CHEMISTRY, ANALYTICAL

最新[2023]版：

Q1 CHEMISTRY, ANALYTICAL

影响因子： 5.6 最新[2023版] 5 最新五年平均 5.6 出版当年[2023版] 5 出版当年五年平均 6.1 出版前一年[2022版]

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第一作者机构： [1]Department of Clinical Laboratory, Sichuan Cancer Hospital and Institute, Sichuan Cancer Center, School of Medicine, University of Electronic Science and Technology of China, Chengdu, 610041, PR China

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