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Identification of biomarkers, pathways and potential therapeutic target for docetaxel resistant prostate cancer

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机构: [1]Department of Urology, Affiliated Zhongda Hospital of Southeast University, Nanjing, China [2]Surgical Research Center, Institute of Urology, Southeast University Medical School, Nanjing, China [3]Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, Cancer Hospital Affiliate to School of Medicine, UESTC, Chengdu, China [4]Department of Urology, Meishan City People’s Hospital, Meishan, China [5]Nanjing Lishui District People’s Hospital, Zhongda Hospital Lishui Branch, Southeast University, Nanjing, China
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关键词: CRPC docetaxel resistance prognosis GEO

摘要:
Docetaxel has been proved to provide survival benefit for advanced prostate cancer (PCa) patients. Resistance to docetaxel further reduces the survival of these patients. Herein, we performed a comprehensive bioinformatic analysis to identify differentially expressed genes (DEGs) between docetaxel sensitive and resistant PCa (DRPC) cell based on Gene Expression Omnibus (GEO) database. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were applied for functional and pathway analysis of DEGs. The STRING database, cytoscape software and plug-in 'cytoHubba' were used to construct protein-protein interaction (PPI) networks and identify hub genes. Survival analysis were performed via GEPIA database. Finally, we conducted immune infiltration analysis by TIMER. A total of 460 DEGs were identified. GO functional analysis showed that these DEGs are mainly enriched in chemotaxis, negative regulation of intracellular signal transduction, and regulation of cell adhesion, positive regulation of inflammatory response, regulation of response to cytokine stimulus. According to the results of KEGG pathway analysis, these DEGs are mainly involved in signaling by Rho GTPases, Miro GTPases and RHOBTB3; interferon Signaling; arginine biosynthesis; PI3K-Akt signaling pathway; cytokine-cytokine receptor interaction; MAPK signaling pathway. Finally, CCNB1 and EZH2 were identified as prognostic hub genes and the expression of these two genes were associated with immune infiltration. The present study may helps to improve the understanding of the molecular mechanisms of DRPC and facilitate the selection of therapeutic and prognostic biomarkers for DRPC.

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基金编号: NSFC

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出版当年[2021]版:
大类 | 4 区 生物学
小类 | 4 区 生物工程与应用微生物
最新[2023]版:
大类 | 4 区 生物学
小类 | 4 区 生物工程与应用微生物
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出版当年[2021]版:
Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
最新[2023]版:
Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2021版] 出版当年五年平均 出版前一年[2020版] 出版后一年[2022版]

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第一作者机构: [1]Department of Urology, Affiliated Zhongda Hospital of Southeast University, Nanjing, China [2]Surgical Research Center, Institute of Urology, Southeast University Medical School, Nanjing, China
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通讯机构: [1]Department of Urology, Affiliated Zhongda Hospital of Southeast University, Nanjing, China [2]Surgical Research Center, Institute of Urology, Southeast University Medical School, Nanjing, China [5]Nanjing Lishui District People’s Hospital, Zhongda Hospital Lishui Branch, Southeast University, Nanjing, China [*1]Department of Urology, Zhongda Hospital, Southeast University, 87 Dingjia Bridge Hunan Road, Nanjing 210009, China
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