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Identification of priority pathogens for aetiological diagnosis in adults with community-acquired pneumonia in China: a multicentre prospective study

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机构: [1]Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, No.9 Dong Dan San Tiao, Dongcheng District, Beijing, 100730, P.R. China. [2]Key Laboratory of Respiratory Disease Pathogenomics, Chinese Academy of Medical Sciences, Peking Union Medical College, No.9 Dong Dan San Tiao, Dongcheng District, Beijing, 100730, P.R. China. [3]Shenzhen Third People's Hospital, Shenzhen, 518112, P.R. China. [4]Fujian Provincial Hospital, Fujian, 350001, P.R. China. [5]Tongji Hospital, Tongji Medical College of Hust, Wuhan, 430030, P.R. China. [6]The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710061, P.R. China. [7]The Second Affiliated Hospital of Harbin Medical University, Harbin, 150001, P.R. China. [8]Jiangsu Provincial Key Laboratory of Critical Care Medicine, Department of Critical Care Medicine, School of Medicine, Zhongda Hospital, Southeast University, Nanjing, 210009, P.R. China. [9]Department of Respiratory and Critical Care Medicine, Lung Cancer Treatment Center, West China Hospital, Sichuan University, Chengdu, 610041, P.R. China. [10]Department of Respiratory Medicine, The First Hospital of Jilin University, Changchun, 130021, China. [11]Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, P.R. China. [12]Peking University People's Hospital, No.11 Xizhimen South Dajie, Xicheng District, Beijing, 100044, P.R. China
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关键词: Community-acquired pneumonia Aetiology Risk factor Severe infection Priority screening pathogens

摘要:
Community-acquired pneumonia (CAP) is a major public health challenge worldwide. However, the aetiological and disease severity-related pathogens associated with CAP in adults in China are not well established based on the detection of both viral and bacterial agents.A multicentre, prospective study was conducted involving 10 hospitals located in nine geographical regions in China from 2014 to 2019. Sputum or bronchoalveolar lavage fluid (BALF) samples were collected from each recruited CAP patient. Multiplex real-time PCR and bacteria culture methods were used to detect respiratory pathogens. The association between detected pathogens and CAP severity was evaluated.Among the 3,403 recruited eligible patients, 462 (13.58%) had severe CAP, and the in-hospital mortality rate was 1.94% (66/3,403). At least one pathogen was detected in 2,054 (60.36%) patients, with two or more pathogens were co-detected in 725 patients. The ten major pathogens detected were Mycoplasma pneumoniae (11.05%), Haemophilus influenzae (10.67%), Klebsiella pneumoniae (10.43%), influenza A virus (9.49%), human rhinovirus (9.02%), Streptococcus pneumoniae (7.43%), Staphylococcus aureus (4.50%), adenovirus (2.94%), respiratory syncytial viruses (2.35%), and Legionella pneumophila (1.03%), which accounted for 76.06-92.52% of all positive detection results across sampling sites. Klebsiella pneumoniae (p < 0.001) and influenza viruses (p = 0.005) were more frequently detected in older patients, whereas Mycoplasma pneumoniae was more frequently detected in younger patients (p < 0.001). Infections with Klebsiella pneumoniae, Staphylococcus aureus, influenza viruses and respiratory syncytial viruses were risk factors for severe CAP.The major respiratory pathogens causing CAP in adults in China were different from those in USA and European countries, which were consistent across different geographical regions over study years. Given the detection rate of pathogens and their association with severe CAP, we propose to include the ten major pathogens as priorities for clinical pathogen screening in China.© 2023. The Author(s).

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大类 | 3 区 医学
小类 | 3 区 传染病学
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大类 | 3 区 医学
小类 | 3 区 传染病学
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Q2 INFECTIOUS DISEASES
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Q2 INFECTIOUS DISEASES

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第一作者机构: [1]Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, No.9 Dong Dan San Tiao, Dongcheng District, Beijing, 100730, P.R. China.
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通讯机构: [1]Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, No.9 Dong Dan San Tiao, Dongcheng District, Beijing, 100730, P.R. China. [2]Key Laboratory of Respiratory Disease Pathogenomics, Chinese Academy of Medical Sciences, Peking Union Medical College, No.9 Dong Dan San Tiao, Dongcheng District, Beijing, 100730, P.R. China.
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