高级检索
当前位置: 首页 > 详情页

Prognostic model and immunotherapy prediction based on molecular chaperone-related lncRNAs in lung adenocarcinoma

文献详情

资源类型:
WOS体系:
Pubmed体系:

收录情况: ◇ SCIE

机构: [1]Guangdong Med Univ, Marine Med Res Inst, Zhanjiang, Peoples R China [2]Zibo Cent Hosp, Dept Gastroscope, Zibo, Peoples R China [3]Shenzhen Univ, Shenzhen Peoples Hosp 2, Affiliated Hosp 1, Dept Urol,Shenzhen Inst Translat Med,Guangdong Pro, Shenzhen, Peoples R China [4]Guangzhou Med Univ, Affiliated Hosp 1, Dept Dermatol, Guangzhou, Peoples R China [5]Nanchong Cent Hosp, Affiliated Nanchong Cent Hosp, Dept Cardiovasc Med, North Sichuan Med Coll, Nanchong, Peoples R China [6]Chongqing Med Univ, Affiliated Hosp 1, Lab Mol Diag, Chongqing, Peoples R China
出处:
ISSN:

关键词: TCGA LUAD lncRNA molecular chaperone-related lncRNA index prognosis immunotherapy

摘要:
Introduction: Molecular chaperones and long non-coding RNAs (lncRNAs) have been confirmed to be closely related to the occurrence and development of tumors, especially lung cancer. Our study aimed to construct a kind of molecular chaperone-related long non-coding RNAs (MCRLncs) marker to accurately predict the prognosis of lung adenocarcinoma (LUAD) patients and find new immunotherapy targets.Methods: In this study, we acquired molecular chaperone genes from two databases, Genecards and molecular signatures database (MsigDB). And then, we downloaded transcriptome data, clinical data, and mutation information of LUAD patients through the Cancer Genome Atlas (TCGA). MCRLncs were determined by Spearman correlation analysis. We used univariate, least absolute shrinkage and selection operator (LASSO) and multivariate Cox regression analysis to construct risk models. Kaplan-meier (KM) analysis was used to understand the difference in survival between high and low-risk groups. Nomogram, calibration curve, concordance index (C-index) curve, and receiver operating characteristic (ROC) curve were used to evaluate the accuracy of the risk model prediction. In addition, we used gene ontology (GO) enrichment analysis and kyoto encyclopedia of genes and genomes (KEGG) enrichment analyses to explore the potential biological functions of MCRLncs. Immune microenvironmental landscapes were constructed by using single-sample gene set enrichment analysis (ssGSEA), tumor immune dysfunction and exclusion (TIDE) algorithm, "pRRophetic " R package, and "IMvigor210 " dataset. The stem cell index based on mRNAsi expression was used to further evaluate the patient's prognosis.Results: Sixteen MCRLncs were identified as independent prognostic indicators in patients with LUAD. Patients in the high-risk group had significantly worse overall survival (OS). ROC curve suggested that the prognostic features of MCRLncs had a good predictive ability for OS. Immune system activation was more pronounced in the high-risk group. Prognostic features of the high-risk group were strongly associated with exclusion and cancer-associated fibroblasts (CAF). According to this prognostic model, a total of 15 potential chemotherapeutic agents were screened for the treatment of LUAD. Immunotherapy analysis showed that the selected chemotherapeutic drugs had potential application value. Stem cell index mRNAsi correlates with prognosis in patients with LUAD.Conclusion: Our study established a kind of novel MCRLncs marker that can effectively predict OS in LUAD patients and provided a new model for the application of immunotherapy in clinical practice.

基金:
语种:
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2022]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
最新[2023]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
JCR分区:
出版当年[2022]版:
Q2 GENETICS & HEREDITY
最新[2023]版:
Q2 GENETICS & HEREDITY

影响因子: 最新[2023版] 最新五年平均 出版当年[2022版] 出版当年五年平均 出版前一年[2021版] 出版后一年[2023版]

第一作者:
第一作者机构: [1]Guangdong Med Univ, Marine Med Res Inst, Zhanjiang, Peoples R China
共同第一作者:
通讯作者:
通讯机构: [1]Guangdong Med Univ, Marine Med Res Inst, Zhanjiang, Peoples R China [3]Shenzhen Univ, Shenzhen Peoples Hosp 2, Affiliated Hosp 1, Dept Urol,Shenzhen Inst Translat Med,Guangdong Pro, Shenzhen, Peoples R China [6]Chongqing Med Univ, Affiliated Hosp 1, Lab Mol Diag, Chongqing, Peoples R China
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:43378 今日访问量:0 总访问量:3120 更新日期:2024-09-01 建议使用谷歌、火狐浏览器 常见问题

版权所有©2020 四川省肿瘤医院 技术支持:重庆聚合科技有限公司 地址:成都市人民南路四段55号