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Comprehensive assessment of cellular senescence in the tumor microenvironment.

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机构: [1]Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College. His researches focus on aging and aging-related diseases. [2]West China Second University Hospital, Sichuan University. [3]School of Basic Medical Sciences, Fudan University
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关键词: cellular senescence pan-cancer single-cell immunotherapy machine learning

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Cellular senescence (CS), a state of permanent growth arrest, is intertwined with tumorigenesis. Due to the absence of specific markers, characterizing senescence levels and senescence-related phenotypes across cancer types remain unexplored. Here, we defined computational metrics of senescence levels as CS scores to delineate CS landscape across 33 cancer types and 29 normal tissues and explored CS-associated phenotypes by integrating multiplatform data from ~20 000 patients and ~212 000 single-cell profiles. CS scores showed cancer type-specific associations with genomic and immune characteristics and significantly predicted immunotherapy responses and patient prognosis in multiple cancers. Single-cell CS quantification revealed intra-tumor heterogeneity and activated immune microenvironment in senescent prostate cancer. Using machine learning algorithms, we identified three CS genes as potential prognostic predictors in prostate cancer and verified them by immunohistochemical assays in 72 patients. Our study provides a comprehensive framework for evaluating senescence levels and clinical relevance, gaining insights into CS roles in cancer- and senescence-related biomarker discovery.© The Author(s) 2022. Published by Oxford University Press.

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出版当年[2022]版:
大类 | 2 区 生物学
小类 | 1 区 数学与计算生物学 1 区 生化研究方法
最新[2023]版:
大类 | 2 区 生物学
小类 | 1 区 生化研究方法 1 区 数学与计算生物学
第一作者:
第一作者机构: [1]Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College. His researches focus on aging and aging-related diseases.
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通讯机构: [3]School of Basic Medical Sciences, Fudan University [*1]State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Science, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100005, China.
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