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Computational toxicology in drug discovery: applications of artificial intelligence in ADMET and toxicity prediction

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机构: [1]School of Pharmacy/School of Modern Chinese Medicine Industry, Chengdu University of Traditional Chinese Medicine, No. 1166, Liutai Avenue, Wenjiang District, Chengdu City, Sichuan Province, 611137, China. [2]School of Clinical Medicine, Chengdu University of Traditional Chinese Medicine, No. 1166, Liutai Avenue, Wenjiang District, Chengdu City, Sichuan Province, 611137, China. [3]Guangdong Provincial Key Laboratory of Tumor Interventional Diagnosis and Treatment, Zhuhai Institute of Translational Medicine, Zhuhai People's Hospital (The Affiliated Hospital of Beijing Institute of Technology, Zhuhai Clinical Medical College of Jinan University), No. 79, Kangning Road, Xiangzhou District, Zhuhai City, Guangdong Province, 519000, China. [4]Department of Ophthalmology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, No. 32, Section 2, West Yihuan Road, Qingyang District, Chengdu, Sichuan Province, 610072, China. [5]School of Healthcare Technology, Chengdu Neusoft University, No. 1, Neusoft Avenue, Qingchengshan Town, Dujiangyan City, Chengdu, Sichuan Province, 611844, China. [6]Department of Respiratory Medicine, Hospital of Chengdu University of Traditional Chinese Medicine, No. 39, Shi'erqiao Road, Jinniu District, Chengdu, Sichuan Province, 610072, China. [7]Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 2006, Xiyuan Avenue, High-tech Zone (West Zone), Chengdu, Sichuan Province, 611731, China. [8]Innovative Institute of Chinese Medicine and Pharmacy, Academy for Interdiscipline, Chengdu University of Traditional Chinese Medicine, No. 1166, Liutai Avenue, Wenjiang District, Chengdu City, Sichuan Province, 611137, China.
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关键词: drug discovery ADMET prediction computational toxicology machine learning toxin databases large language models

摘要:
Toxicity risk assessment plays a crucial role in determining the clinical success and market potential of drug candidates. Traditional animal-based testing is costly, time-consuming, and ethically controversial, which has led to the rapid development of computational toxicology. This review surveys over 20 ADMET prediction platforms, categorizing them into rule/statistical-based methods, machine learning (ML) methods, and graph-based methods. We also summarize major toxicological databases into four types: chemical toxicity, environmental toxicology, alternative toxicology, and biological toxin databases, highlighting their roles in model training and validation. Furthermore, we review recent advancements in ML and artificial intelligence (AI) applied to toxicity prediction, covering acute toxicity, organ-specific toxicities, and carcinogenicity. The field is transitioning from single-endpoint predictions to multi-endpoint joint modeling, incorporating multimodal features. We also explore the application of generative modeling techniques and interpretability frameworks to improve the accuracy and credibility of predictions. Additionally, we discuss the use of network toxicology in evaluating the safety of traditional Chinese medicines (TCMs) and the potential of large language models (LLMs) in literature mining, knowledge integration, and molecular toxicity prediction. Finally, we address current challenges, including data quality, model interpretability, and causal inference, and propose future directions such as multi-omics integration, interpretable AI models, and domain-specific LLMs, aiming to provide more efficient and precise technical support for preclinical toxicity assessments in drug development.© The Author(s) 2025. Published by Oxford University Press.

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出版当年[2025]版:
大类 | 2 区 生物学
小类 | 1 区 数学与计算生物学 2 区 生化研究方法
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大类 | 2 区 生物学
小类 | 1 区 数学与计算生物学 2 区 生化研究方法
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出版当年[2024]版:
Q1 BIOCHEMICAL RESEARCH METHODS Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
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Q1 BIOCHEMICAL RESEARCH METHODS Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY

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第一作者机构: [1]School of Pharmacy/School of Modern Chinese Medicine Industry, Chengdu University of Traditional Chinese Medicine, No. 1166, Liutai Avenue, Wenjiang District, Chengdu City, Sichuan Province, 611137, China.
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通讯机构: [6]Department of Respiratory Medicine, Hospital of Chengdu University of Traditional Chinese Medicine, No. 39, Shi'erqiao Road, Jinniu District, Chengdu, Sichuan Province, 610072, China. [7]Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 2006, Xiyuan Avenue, High-tech Zone (West Zone), Chengdu, Sichuan Province, 611731, China. [*1]Department of Respiratory Medicine, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan 610072, China [*2]Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 611731, China
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