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Upregulation of circ_0008812 and circ_0001583 predicts poor prognosis and promotes breast cancer proliferation

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机构: [1]Univ Elect Sci & Technol China,Dept Clin Res,Sichuan Canc Hosp & Inst,Sichuan Canc Ctr,Sch Med,Chengdu,Peoples R China [2]Chengdu Med Coll,Lab Med Ctr,Sichuan Prov Matern & Child Hlth Care Hosp,Affiliated Womens & Childrens Hosp,Chengdu,Peoples R China [3]Southwest Jiaotong Univ,Peoples Hosp Chengdu 3,Dept Pharm,Chengdu,Peoples R China [4]Southwest Jiaotong Univ,Coll Med,Chengdu,Peoples R China
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关键词: breast cancer circ_0008812 circ_0001583 competing endogenous RNA prognosis biomarker

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Background: Accumulating evidence suggests that circular RNAs (circRNAs) are highly correlated with tumor progression and pathogenesis in breast cancer. Whereas, their regulatory roles and corresponding mechanisms in breast cancer are still not exhaustive. Thus, we intended to establish circRNA-mediated competive endogenous RNA (ceRNA) network to uncover the possible roles and clinical implications of circRNAs in breast cancer. Methods: Microarray and RNA-sequencing (RNA-seq) data were download from GEO and TCGA database to screen for differentially expressed RNAs (DEcircRNAs, DEmiRNAs, DEmRNAs) in breast cancer. By implementing online databases, we established ceRNA networks, performed gene set enrichment analysis, constructed protein-protein interaction (PPI) networks, and assessed the expression levels and prognostic significance of hub genes. Subsequently, we explored the functions of prognosis-related genes and constructed gene-drug interaction networks. Finally, the functional roles of DEcircRNAs in breast cancer were revealed via MTT and colony formation assay. Results: Based on the identified 8 DEcircRNAs, 25 miRNAs and 216 mRNAs, a ceRNA regulatory network was established. Further analysis revealed that prominent enrichments were transcription factor binding, transforming growth factor-beta (TGF-beta) and Apelin signaling pathway etc. PPI network and survival curves analysis showed that elevated levels of hub genes (RACGAP1 and KPNA2) were associated with poorer prognosis. They were found to be positively relevant to cell cycle and proliferation. Then a prognostic sub-network of ceRNA was constructed, consisting of 2 circRNAs, 4 miRNAs and 2 mRNAs. The gene-drug interaction network showed that numerous drugs could regulate the expression of these two prognosis-related genes. Functional experiments showed that depletion of circ_0008812 and circ_0001583 could significantly inhibit the proliferation of MCF-7 cells. Conclusion: Our study constructed 4 prognostic regulatory axes that are significantly correlated with tumor prognosis in breast cancer patients, and uncover the roles of circ_0008812 and circ_0001583 in breast cancer, providing a new perspective into the molecular mechanisms of breast cancer pathogenesis.

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基金编号: 82274142 81803931 81703922 2021YFH0144 2022088

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出版当年[2022]版:
大类 | 3 区 生物学
小类 | 3 区 生化与分子生物学
最新[2023]版:
大类 | 3 区 生物学
小类 | 3 区 生化与分子生物学
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出版当年[2022]版:
Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
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Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY

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第一作者机构: [1]Univ Elect Sci & Technol China,Dept Clin Res,Sichuan Canc Hosp & Inst,Sichuan Canc Ctr,Sch Med,Chengdu,Peoples R China
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通讯机构: [1]Univ Elect Sci & Technol China,Dept Clin Res,Sichuan Canc Hosp & Inst,Sichuan Canc Ctr,Sch Med,Chengdu,Peoples R China
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