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Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci

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机构: [1]Singapore Eye Research Institute, Singapore [2]Singapore National Eye Center, Singapore [3]Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore [4]Ozaki Eye Hospital, Hyuga, Miyazaki, Japan [5]Department of Ophthalmology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan [6]Academic Clinical Program for Ophthalmology and Visual Sciences, Office of Clinical and Academic Faculty Affairs, Duke–NUS Graduate Medical School, Singapore [7]Department of Ophthalmology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany [8]deCODE Genetics, Reykjavik, Iceland [9]Mizoguchi Eye Hospital, Sasebo, Japan [10]Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA [11]Aravind Eye Hospital, Madurai, India [12]Division of Ophthalmology, University of the Witwatersrand, Johannesburg, South Africa [13]Department of Ophthalmology, Pavlov First Saint Petersburg State Medical University, St.Petersburg, Russia [14]Department of Ophthalmology, Dalhousie University, Halifax, Nova Scotia, Canada [15]Department of Pathology, Dalhousie University, Halifax, Nova Scotia, Canada [16]Department of Ophthalmology, Flinders University, Adelaide, South Australia, Australia [17]Menzies Institute for Medical Research, University of Tasmania, Hobart, Tasmania, Australia [18]Department of Ophthalmology, Oita University Faculty of Medicine, Oita, Japan [19]Department of Ophthalmology, Kyoto Prefectural University of Medicine, Kyoto, Japan [20]Department of Ophthalmology, College of Medicine, King Saud University, Riyadh, Saudi Arabia [21]Department of Ophthalmology, College of Medicine, University of Florida, Jacksonville, Florida, USA [22]Department of Ophthalmology, Duke University Eye Center, Durham, North Carolina, USA [23]Department of Medicine, Duke University Medical Center, Durham, North Carolina, USA [24]Genome Institute of Singapore, Singapore [25]Department of Genetics, Aravind Medical Research Foundation, Madurai, India [26]‘Carol Davila’ University of Medicine and Pharmacy, Bucharest, Romania [27]Department of Ophthalmology, University Emergency Hospital, Bucharest, Romania [28]Channing Division of Network Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts, USA [29]Department of Biostatistics, University of Washington, Seattle, Washington, USA [30]Hayashi Eye Hospital, Fukuoka, Japan [31]Shinjo Eye Clinic, Miyazaki, Japan [32]Department of Diagnostics and Microsurgery of Glaucoma, Medical University, Lublin, Poland [33]Inoue Eye Hospital, Tokyo, Japan [34]Department of Ophthalmology, Hacettepe University, Faculty of Medicine, Ankara, Turkey [35]Fernández-Vega University Institute and Foundation of Ophthalmological Research, University of Oviedo, Oviedo, Spain [36]Fernández-Vega Ophthalmological Institute, Oviedo, Spain [37]Department of Ophthalmology and Visual Science, Yale University School of Medicine, New Haven, Connecticut, USA [38]Department of Ophthalmology, Kanazawa University Graduate School of Medical Science, Kanazawa, Japan [39]Department of Medical Genetics, University of Helsinki, Helsinki, Finland [40]Organización Médica de Investigación, Buenos Aires, Argentina [41]Fundación para el Estudio del Glaucoma, Buenos Aires, Argentina [42]Clinique Spécialisée en Ophtalmologie Mohammedia, Mohammedia, Morocco [43]Department of Ophthalmology, Eskisehir Osmangazi University, Meselik, Eskisehir, Turkey [44]Ufa Eye Research Institute, Ufa, Russia [45]Department of Ophthalmology, Seoul National University Hospital, Seoul National University College of Medicine, Seoul, Republic of Korea [46]Department of Ophthalmology, Yeungnam University College of Medicine, Daegu, Republic of Korea [47]Department of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan [48]Department of Ophthalmology, Otsu Red Cross Hospital, Otsu, Japan [49]Genetics Department, Institute of Ophthalmology ‘Conde de Valenciana’, Mexico City, Mexico [50]Biochemistry Department, Faculty of Medicine, UNAM, Mexico City, Mexico. [51]Department of Ophthalmology, Medical Faculty Mannheim of the Ruprecht Karls University of Heidelberg, Mannheim, Germany [52]Beijing Tongren Eye Center, Beijing Tongren Hospital, Capital Medical University, Beijing Ophthalmology and Visual Science Key Laboratory, Beijing, China [53]Narayana Nethralaya Eye Hospital, Bangalore, India [54]Chichua Medical Center Mzera, LLC, Tbilisi, Georgia [55]Jadhavbhai Nathamal Singhvi Department of Glaucoma, Medical Research Foundation, Chennai, India [56]Vietnam National Institute of Ophthalmology, Hanoi, Vietnam [57]King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia [58]Department of Ophthalmology and Visual Sciences, Illinois Eye and Ear Infirmary, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA [59]Department of Ophthalmology, University Hospital of Salamanca, Salamanca, Spain [60]Institute for Biomedical Research of Salamanca (IBSAL), Salamanca, Spain [61]Ophthalmic Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran [62]Farabi Eye Hospital, Tehran University Eye Research Center, Tehran University of Medical Sciences, Tehran, Iran [63]Ideta Eye Hospital, Kumamoto City, Japan [64]Eye Clinic, Rigshospitalet–Glostrup, Glostrup, Denmark [65]John A.Moran Eye Center, Department of Ophthalmology, University of Utah, Salt Lake City, Utah, USA [66]Sichuan Provincial Key Laboratory for Human Disease Gene Study, Sichuan Provincial People’s Hospital, University of Electronic Science and Technology of China, Chengdu, China [67]School of Medicine, University of Electronic Science and Technology of China, Chengdu, China [68]Department of Ophthalmology, First Affiliated Hospital of Xinjiang Medical University, Urumchi, China [69]Center for Human Molecular Biology and Genetics, Institute of Laboratory Medicine, Sichuan Academy of Medical Sciences and Sichuan Provincial People’s Hospital, Chengdu, China [70]Sichuan Translational Research Hospital, Chinese Academy of Sciences, Chengdu, China [71]Beijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, Beijing, China [72]Shenzhen Key Laboratory of Ophthalmology, Shenzhen Eye Hospital, Jinan University, Shenzhen, China [73]Département d’Ophtalmologie, Centre Hospitalier Universitaire, Angers, France [74]Département de Biochimie et Génétique, Centre Hospitalier Universitaire, Angers, France [75]David Tvildiani Medical University, Tbilisi, Georgia [76]Institute of Human Genetics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany [77]Department of Ophthalmology, Medical University Graz, Graz, Austria [78]Institute for Ophthalmic Research, Centre for Ophthalmology, University of Tübingen, Tübingen, Germany [79]Department of Ophthalmology, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece [80]Laboratory of General Biology, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece [81]GROW Research Laboratory, Narayana Nethralaya Foundation, Bangalore, India [82]Santa Lucia Eye Hospital from Buenos Aires, Buenos Aires, Argentina [83]Aravind Eye Hospital, Pondicherry, India [84]Aravind Eye Hospital, Tirunelveli, India [85]Aravind Eye Hospital, Coimbatore, India [86]Vision Research Foundation, Chennai, India [87]Ocular Tissue Engineering Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran [88]Dipartimento di Scienze Chirurgiche, Università di Torino, Turin, Italy [89]Ophthalmology Unit, Department of Medicine, Surgery and Neuroscience, University of Siena, Siena, Italy [90]Department of Ophthalmology, Monfalcone Hospital, Gorizia, Italy [91]Department of Health Sciences, University of Milan, Milan, Italy [92]Department of Nephrology, University Vita-Salute San Raffaele, Milan, Italy [93]Miyata Eye Hospital, Miyazaki, Japan [94]Sensho-kai Eye Institute, Kyoto, Japan [95]Department of Medicine and Engineering Combined Research Institute, Asahikawa Medical University, Asahikawa, Japan [96]Department of Ophthalmology, Asahikawa Medical University, Asahikawa, Japan [97]Department of Ophthalmology and Visual Sciences, Hiroshima University, Hiroshima, Japan [98]Ohashi Eye Center, Sapporo, Japan [99]Tane Memorial Eye Hospital, Osaka, Japan [100]Department of Ophthalmology, University of Tokyo, Tokyo, Japan [101]Department of Ophthalmology, Faculty of Medical Science, University of Fukui, Fukui, Japan [102]Center for Genomic Medicine, INSERM U852, Kyoto University Graduate School of Medicine, Kyoto, Japan [103]Tazuke Kofukai Foundation, Medical Research Institute, Kitano Hospital, Osaka, Japan [104]Department of Ophthalmology, Seoul National University Bundang Hospital, Gyeonggi, Republic of Korea [105]Department of Ophthalmology, Seoul Metropolitan Government Seoul National University Boramae Medical Center, Seoul, Republic of Korea [106]Laboratoires RAFEI, Mohammedia, Morocco [107]Department of Human Genetics, Radboud University Medical Centre, Nijmegen, the Netherlands [108]Department of Ophthalmology, College of Medicine, University of Ibadan, Ibadan, Nigeria [109]Department of Ophthalmology, University College Hospital, Ibadan, Nigeria [110]ECWA Eye Hospital, Kano, Nigeria [111]Department of Ophthalmology, University of Lagos, Lagos, Nigeria [112]Guinness Eye Centre, Lagos University Teaching Hospital, Lagos, Nigeria [113]Department of Ophthalmology, ESUT Teaching Hospital Parklane, Enugu, Nigeria [114]Eye Specialists Hospital, Enugu, Nigeria [115]Department of Ophthalmology, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand [116]Department of Ophthalmology, University of Nigeria Teaching Hospital, Ituku-Ozalla, Enugu, Nigeria [117]Department of Ophthalmology, College of Medicine, University of Nigeria, Nsukka, Ituku Ozalla Campus, Enugu, Nigeria [118]Department of Environmental Sciences, COMSATS Institute of Information Technology, Abbottabad, Pakistan [119]Pakistan Institute of Ophthalmology, Al-Shifa Trust Eye Hospital, Rawalpindi, Pakistan [120]Centro Oftalmologico Lischinsky, Tucumán, Argentina [121]Universidad Peruana Cayetano Heredia, Hospital Nacional Arzobispo Loayza, Lima, Peru [122]Instituto de Glaucoma y Catarata, Lima, Peru [123]Clinical Research Centre Adolphe de Rothschild, Société Médicale de Beaulieu, Geneva, Switzerland [124]Mater Misericordiae University Hospital, Dublin, Ireland [125]Shri Mithu Tulsi, LV Prasad Eye Institute, Bhubaneswar, India [126]Hospital Córdoba, Córdoba, Argentina [127]Centro Oftalmologico Charles, Buenos Aires, Argentina [128]Centre for Vision Research, Department of Ophthalmology and Westmead Institute for Medical Research, University of Sydney, Sydney, New South Wales, Australia [129]Centre for Eye Research Australia (CERA), University of Melbourne, Royal Victorian Eye and Ear Hospital, Melbourne, Victoria, Australia [130]St.Petersburg Academic University, St.Petersburg, Russia [131]Clinical Pharmacology, SingHealth, Singapore [132]Clinical Pharmacology Laboratory, National Cancer Centre, Singapore [133]Office of Clinical Sciences, Duke–NUS Medical School, Singapore [134]Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore [135]Department of Ophthalmology, Tan Tock Seng Hospital, Singapore [136]Molecular Medicine Unit, Department of Medicine, University of Salamanca, Salamanca, Spain [137]Translational Pediatrics and Infectious Diseases, Hospital Clínico Universitario de Santiago, Santiago de Compostela, Spain [138]GENVIP Research Group, Instituto de Investigación Sanitaria de Santiago, Santiago de Compostela, Spain [139]Unidade de Xenética, Departamento de Anatomía Patolóxica e Ciencias Forenses, Instituto de Ciencias Forenses, Facultade de Medicina, Universidade de Santiago de Compostela, Santiago de Compostela, Spain [140]Instituto de Ciencias Forenses, Facultade de Medicina, Universidade de Santiago de Compostela, Santiago de Compostela, Spain [141]Department of Ophthalmology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand [142]Department of Ophthalmology, Rajavithi Hospital, Bangkok, Thailand [143]Department of Ophthalmology, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand [144]Institut Pasteur, Functional Genetics of Infectious Diseases Unit, Department of Genomes and Genetics, Paris, France [145]Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012, Paris, France [146]Department of General Pediatrics, Medical University of Graz, Graz, Austria [147]Faculty of Infectious and Tropical Disease, London School of Hygiene and Tropical Medicine, London, UK [148]Department of Genomics, Life & Brain Center, University of Bonn, Bonn, Germany [149]Department of Biomedicine, University of Basel, Basel, Switzerland [150]Division of Medical Genetics, University Hospital Basel, Basel, Switzerland [151]Institute of Human Genetics, University of Bonn, Bonn, Germany [152]Institute for Medical Informatics, Biometry and Epidemiology, University Hospital of Essen, University Duisburg-Essen, Essen, Germany [153]Division of Ophthalmology, Stellenbosch University and Tygerberg Hospital, Cape Town, South Africa [154]Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa [155]Department of Genetics, Eskisehir Osmangazi University, Meselik, Eskisehir, Turkey [156]Istanbul University Cerrahpasa Faculty of Medicine, Istanbul, Turkey [157]DAMAGEN Genetic Diagnostic Center, Ankara, Turkey [158]School of Medicine, Wayne State University, Detroit, Michigan, USA [159]Center for Community Outreach and Policy, Stein Eye Institute, David Geffen School of Medicine at UCLA, Los Angeles, California, USA [160]Department of Cellular Biology and Anatomy, Center for Biotechnology and Genomic Medicine, James and Jean Culver Discovery Institute, Augusta University, Augusta, Georgia, USA [161]Vanderbilt Eye Institute, Vanderbilt University Medical Center, Nashville, Tennessee, USA [162]Hamilton Glaucoma Center, Department of Ophthalmology and Shiley Eye Institute, University of California, San Diego, San Diego, California, USA [163]Department of Genomic Medical Sciences, Kyoto Prefectural University of Medicine, Kyoto, Japan [164]Department of Frontier Medical Science and Technology for Ophthalmology, Kyoto Prefectural University of Medicine, Kyoto, Japan [165]Department of Ophthalmology, Radboud University Medical Centre, Nijmegen, the Netherlands [166]Department of Ophthalmology, University of Turku and Turku University Hospital, Turku, Finland [167]Institute for Vision Research, University of Iowa, Iowa City, Iowa, USA [168]Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA [169]Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, Florida, USA [170]Department of Ophthalmology, Mayo Clinic, Rochester, Minnesota, USA [171]Ophthalmic Consultants of Boston, Boston, Massachusetts, USA [172]Institute of Biomedical Technologies, Italian National Research Centre (ITB-CNR), Segrate-Milano, Italy [173]Department of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan [174]Department of Biochemistry, Al-Nafees Medical College and Hospital, Isra University, Islamabad, Pakistan [175]Department of Epidemiology, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, USA [176]John P.Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA [177]Divisions of Genetics and Rheumatology, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, USA [178]Partners Center for Personalized Genetic Medicine, Boston, Massachusetts, USA [179]Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA [180]Institute of Inflammation and Repair, University of Manchester, Manchester, UK [181]Rheumatology Unit, Department of Medicine, Karolinska Institutet and Karolinska University Hospital Solna, Stockholm, Sweden [182]Department of Ophthalmology, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark [183]Department of Pathology, Rigshospitalet, Eye Pathology Section, University of Copenhagen, Copenhagen, Denmark [184]Department of Ophthalmology,University of Helsinki and Helsinki University Hospital, Helsinki, Finland. [185]Department of Ophthalmology, Harvard Medical School, Massachusetts Eye and Ear Infirmary, Boston, Massachusetts, USA [186]Institute of Computational Biology, Case Western Reserve University, Cleveland, Ohio, USA [187]Faculty of Medicine, University of Iceland, Reykjavik, Iceland [188]Department of Ophthalmology, Landspitali University Hospital, Reykjavik, Iceland [189]Einhorn Clinical Research Center, New York Eye and Ear Infirmary of Mount Sinai, New York, New York, USA [190]Dr.G.Venkataswamy Eye Research Institute, Aravind Medical Research Foundation, Aravind Eye Hospital, Madurai, India [191]Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
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Exfoliation syndrome (XFS) is the most common known risk factor for secondary glaucoma and a major cause of blindness worldwide. Variants in two genes, LOXL1 and CACNA1A, have previously been associated with XFS. To further elucidate the genetic basis of XFS, we collected a global sample of XFS cases to refine the association at LOXL1, which previously showed inconsistent results across populations, and to identify new variants associated with XFS. We identified a rare protective allele at LOXL1 (p.Phe407, odds ratio (OR) = 25, P = 2.9 x 10(-14)) through deep resequencing of XFS cases and controls from nine countries. A genome-wide association study (GWAS) of XFS cases and controls from 24 countries followed by replication in 18 countries identified seven genome-wide significant loci (P < 5 x 10(-8)). We identified association signals at 13q12 (POMP), 11q23.3 (TMEM136), 6p21 (AGPAT1), 3p24 (RBMS3) and 5q23 (near SEMA6A). These findings provide biological insights into the pathology of XFS and highlight a potential role for naturally occurring rare LOXL1 variants in disease biology.

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出版当年[2017]版:
大类 | 1 区 生物
小类 | 1 区 遗传学
最新[2023]版:
大类 | 1 区 生物学
小类 | 1 区 遗传学
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出版当年[2017]版:
Q1 GENETICS & HEREDITY
最新[2023]版:
Q1 GENETICS & HEREDITY

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第一作者机构: [1]Singapore Eye Research Institute, Singapore [2]Singapore National Eye Center, Singapore [3]Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
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通讯作者:
通讯机构: [1]Singapore Eye Research Institute, Singapore [2]Singapore National Eye Center, Singapore [3]Department of Ophthalmology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore [24]Genome Institute of Singapore, Singapore [191]Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
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