机构:[1]Key Laboratory of Clinical Laboratory Diagnostics (ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing 400016, China.[2]Department of Laboratory Medicine, the First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Core Unit of National Clinical Research Center for Laboratory Medicine, Hefei, Anhui 230001, China.[3]Medical Oncology, Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital and Chongqing Cancer Institute, Chongqing 400030, China.[4]Department of Laboratory Medicine, The Affiliated Hospital of Southwest Medical University, Sichuan Province Engineering Technology Research Center of Molecular Diagnosis of Clinical Diseases, Molecular Diagnosis of Clinical Diseases Key Laboratory of Luzhou, Sichuan 646000, China.[5]Department of Laboratory Medicine, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, China.
As potential biomarkers for breast cancer, microRNAs (miRNAs) have demonstrated significant promise in clinical applications. However, accurate miRNA-based breast cancer diagnosis is hindered by the lack of simple, ultrasensitive, and highly specific detection methods and reliable biomarkers. To tackle these challenges, we introduced an innovative strategy using rolling circle amplification-generated DNA seaweed (RCA-GDS) to detect the multiple miRNA biomarkers combined with machine learning to enable precise breast cancer diagnosis. RCA-GDS effectively converts linear RCA amplification into exponential amplification, efficiently enhancing fluorescence signals and enabling the detection of miRNAs at concentrations as low as attomolar levels within 2 h under isothermal conditions. Using the TCGA database, we screened a panel of miRNAs (miRNA21, miRNA182, and miRNA183) for the precise diagnosis of breast cancer and validated their reliability in both intracellular and serum samples. Finally, we integrated machine learning algorithms with the miRNA detection system to develop a differential diagnosis model, which was further validated in an independent cohort and demonstrated excellent diagnostic accuracy. This work not only enables ultrasensitive and highly specific miRNA detection but also advances miRNA panel-based clinical applications in breast cancer diagnosis.
基金:
the Natural Science
Foundation (CSTB2023NSCQ-MSX0915), USTC Research
Funds of the Double First-Class Initiative (YD9110002122),
and the Postdoctoral Research Projects in Chongqing
(2023CQBSHTB3028).
语种:
外文
PubmedID:
中科院(CAS)分区:
出版当年[2025]版:
大类|1 区化学
小类|1 区分析化学
最新[2025]版:
大类|1 区化学
小类|1 区分析化学
第一作者:
第一作者机构:[1]Key Laboratory of Clinical Laboratory Diagnostics (ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing 400016, China.
共同第一作者:
通讯作者:
推荐引用方式(GB/T 7714):
Tao Xingyu,Li Xinyu,Lv Qikun,et al.Machine Learning-Enhanced Analysis of miRNA Biomarkers for Accurate Breast Cancer Diagnosis Using DNA Seagrass[J].Analytical Chemistry.2025,97(41):22582-22594.doi:10.1021/acs.analchem.5c03687.
APA:
Tao Xingyu,Li Xinyu,Lv Qikun,Tian Gang,Jia Hengke...&Yan Yurong.(2025).Machine Learning-Enhanced Analysis of miRNA Biomarkers for Accurate Breast Cancer Diagnosis Using DNA Seagrass.Analytical Chemistry,97,(41)
MLA:
Tao Xingyu,et al."Machine Learning-Enhanced Analysis of miRNA Biomarkers for Accurate Breast Cancer Diagnosis Using DNA Seagrass".Analytical Chemistry 97..41(2025):22582-22594