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A human adenovirus C infection-related gene panel for predicting survival and treatment responsiveness in glioma patients

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机构: [1]Department of Oncology, Sichuan Academy of Medical Sciences, Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, Sichuan, China [2]Department of Neurosurgery, 920th Hospital of Joint Logistics Support Force, Kunming, China [3]Guangxi Medical University Cancer Hospital, Guangxi Medical University, Nanning, Guangxi, China [4]Integrative Cancer Center & Cancer Clinical Research Center, Sichuan Cancer Hospital & Institute, Sichuan Cancer Center, School of Medicine, University of Electronic Science and Technology of China, Chengdu, Sichuan, China [5]School of Electronic Science and Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan, China
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关键词: glioma human adenovirus C temozolomide radiotherapy resistance

摘要:
Viruses are critical for the regulation of cancer development as well as therapy. Human adenovirus C (HadVC) has been detected in central nervous system and glioma tissue. The objective of current study was the development of a robust prognostic model based on HadVC infection (HadVCi)-relevant genes.The genome, transcriptome, and virome were systemically analyzed using TCGA dataset for training and two cohorts from CGGA and an immunotherapy trial cohort with 17 patients receiving anti-PD-1 treatment for validation. HadVCi-relevant gene selection from differentially expressed genes (DEGs) between HadVC-infected or non-infected glioma patients using LASSO regression was followed by Cox regression modeling to establish a prognostic HadVCi score. Kaplan-Meier and ROC curve analyses were performed to estimate the predictive capacity of HadVCi score. Chi-square/Spearman/Mann Whitney U test is utilized to identify its correlation to clinicopathological parameters, treatment responsiveness, and immune landscape. TMZ-resistant glioma cells were established and analyzed at the transcriptional level using RNA-seq data.HadVCi score =(-0.2526673*TRPC6) + (-0.2244276*RNF207) + (-0.0894468*SEC31B) + (-0.0190214* ZCRB1) + (-0.017122*DNPH1) + (0.0495818*CCDC34) + (0.1196349*PURG) + (0.1778997*LILRA5). The score possesses a strong ability to predict overall survival. Further analysis revealed higher HadVCi score is correlated with malignant phenotype, and poorer treatment responsiveness, such as TMZ-based chemotherapy and combined therapies. Additionally, transcriptomic analysis showed malignancy-, stemness-, and radioresistance-related gene activation in HadVCi group, which characterized the poor outcomes and limited sensitivity to standard therapy.The HadVCi score may be an effective tool for survival prediction and treatment guidance in patients with glioma.Copyright © 2023. Published by Elsevier Inc.

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出版当年[2023]版:
大类 | 4 区 医学
小类 | 4 区 临床神经病学 4 区 外科
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 临床神经病学 4 区 外科
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出版当年[2023]版:
Q2 SURGERY Q3 CLINICAL NEUROLOGY
最新[2023]版:
Q2 SURGERY Q3 CLINICAL NEUROLOGY

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第一作者机构: [1]Department of Oncology, Sichuan Academy of Medical Sciences, Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, Sichuan, China
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