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WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

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机构: [1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China [2]Department of Radiation Oncology, Sichuan Cancer Hospital and Institute, Sichuan Cancer Center, Chengdu, China [3]Department of Radiation Oncology, Cancer Center West China Hospital, Sichuan University, Chengdu, China [4]Shanghai Artificial Intelligence Laboratory, Shanghai, China [5]School of Medicine, University of Electronic Science and Technology of China, Chengdu, China [6]Department of Computer Science, Johns Hopkins University, Baltimore, USA [7]SenseTime Research, Shanghai, China [8]West China Hospital-SenseTime Joint Lab, West China Biomedical Big Data Center, Sichuan University, Chengdu, China [9]Department of Computer Science, Rutgers University, Piscataway, NJ, USA
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关键词: Abdominal organ segmentation Dataset Benchmark Clinical applicable study

摘要:
Whole abdominal organ segmentation is important in diagnosing abdomen lesions, radiotherapy, and followup. However, oncologists' delineating all abdominal organs from 3D volumes is time-consuming and very expensive. Deep learning-based medical image segmentation has shown the potential to reduce manual delineation efforts, but it still requires a large-scale fine annotated dataset for training, and there is a lack of large-scale datasets covering the whole abdomen region with accurate and detailed annotations for the whole abdominal organ segmentation. In this work, we establish a new large-scale Whole abdominal ORgan Dataset (WORD) for algorithm research and clinical application development. This dataset contains 150 abdominal CT volumes (30495 slices). Each volume has 16 organs with fine pixel-level annotations and scribble-based sparse annotations, which may be the largest dataset with whole abdominal organ annotation. Several state-of-theart segmentation methods are evaluated on this dataset. And we also invited three experienced oncologists to revise the model predictions to measure the gap between the deep learning method and oncologists. Afterwards, we investigate the inference-efficient learning on the WORD, as the high-resolution image requires large GPU memory and a long inference time in the test stage. We further evaluate the scribble-based annotation-efficient learning on this dataset, as the pixel-wise manual annotation is time-consuming and expensive. The work provided a new benchmark for the abdominal multi-organ segmentation task, and these experiments can serve as the baseline for future research and clinical application development.

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出版当年[2022]版:
大类 | 1 区 工程技术
小类 | 1 区 工程:生物医学 1 区 核医学 1 区 计算机:人工智能 1 区 计算机:跨学科应用
最新[2023]版:
大类 | 1 区 医学
小类 | 1 区 计算机:人工智能 1 区 计算机:跨学科应用 1 区 工程:生物医学 1 区 核医学
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出版当年[2022]版:
Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Q1 ENGINEERING, BIOMEDICAL Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
最新[2023]版:
Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Q1 ENGINEERING, BIOMEDICAL Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING

影响因子: 最新[2023版] 最新五年平均 出版当年[2022版] 出版当年五年平均 出版前一年[2021版] 出版后一年[2023版]

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第一作者机构: [1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China [4]Shanghai Artificial Intelligence Laboratory, Shanghai, China
通讯作者:
通讯机构: [1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China [4]Shanghai Artificial Intelligence Laboratory, Shanghai, China [*1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China [*2]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China
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