机构:[1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China[2]Department of Radiation Oncology, Sichuan Cancer Hospital and Institute, Sichuan Cancer Center, Chengdu, China四川省肿瘤医院[3]Department of Radiation Oncology, Cancer Center West China Hospital, Sichuan University, Chengdu, China[4]Shanghai Artificial Intelligence Laboratory, Shanghai, China[5]School of Medicine, University of Electronic Science and Technology of China, Chengdu, China四川省人民医院[6]Department of Computer Science, Johns Hopkins University, Baltimore, USA[7]SenseTime Research, Shanghai, China[8]West China Hospital-SenseTime Joint Lab, West China Biomedical Big Data Center, Sichuan University, Chengdu, China[9]Department of Computer Science, Rutgers University, Piscataway, NJ, USA
Whole abdominal organ segmentation is important in diagnosing abdomen lesions, radiotherapy, and followup. However, oncologists' delineating all abdominal organs from 3D volumes is time-consuming and very expensive. Deep learning-based medical image segmentation has shown the potential to reduce manual delineation efforts, but it still requires a large-scale fine annotated dataset for training, and there is a lack of large-scale datasets covering the whole abdomen region with accurate and detailed annotations for the whole abdominal organ segmentation. In this work, we establish a new large-scale Whole abdominal ORgan Dataset (WORD) for algorithm research and clinical application development. This dataset contains 150 abdominal CT volumes (30495 slices). Each volume has 16 organs with fine pixel-level annotations and scribble-based sparse annotations, which may be the largest dataset with whole abdominal organ annotation. Several state-of-theart segmentation methods are evaluated on this dataset. And we also invited three experienced oncologists to revise the model predictions to measure the gap between the deep learning method and oncologists. Afterwards, we investigate the inference-efficient learning on the WORD, as the high-resolution image requires large GPU memory and a long inference time in the test stage. We further evaluate the scribble-based annotation-efficient learning on this dataset, as the pixel-wise manual annotation is time-consuming and expensive. The work provided a new benchmark for the abdominal multi-organ segmentation task, and these experiments can serve as the baseline for future research and clinical application development.
基金:
National Natural Science Foundation of China [81771921, 61901084]; National Key Research and Development Program, China [2020YFB1711503]; key research and development project of Sichuan province, China [20ZDYF2817]
语种:
外文
被引次数:
WOS:
PubmedID:
中科院(CAS)分区:
出版当年[2022]版:
大类|1 区工程技术
小类|1 区工程:生物医学1 区核医学1 区计算机:人工智能1 区计算机:跨学科应用
最新[2023]版:
大类|1 区医学
小类|1 区计算机:人工智能1 区计算机:跨学科应用1 区工程:生物医学1 区核医学
JCR分区:
出版当年[2022]版:
Q1COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCEQ1COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONSQ1ENGINEERING, BIOMEDICALQ1RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
最新[2023]版:
Q1COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCEQ1COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONSQ1ENGINEERING, BIOMEDICALQ1RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
第一作者机构:[1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China[4]Shanghai Artificial Intelligence Laboratory, Shanghai, China
通讯作者:
通讯机构:[1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China[4]Shanghai Artificial Intelligence Laboratory, Shanghai, China[*1]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China[*2]School of Mechanical and Electrical Engineering, University of Electronic Science and Technology of China, Chengdu, China
推荐引用方式(GB/T 7714):
Luo Xiangde,Liao Wenjun,Xiao Jianghong,et al.WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image[J].MEDICAL IMAGE ANALYSIS.2022,82:doi:10.1016/j.media.2022.102642.
APA:
Luo, Xiangde,Liao, Wenjun,Xiao, Jianghong,Chen, Jieneng,Song, Tao...&Zhang, Shaoting.(2022).WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image.MEDICAL IMAGE ANALYSIS,82,
MLA:
Luo, Xiangde,et al."WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image".MEDICAL IMAGE ANALYSIS 82.(2022)